How to find and analyse repeats in DNA?

1

Hi

I need to find repeats ( not only tandem) in DNA sequences ( fasta)
Length diapason of sequences are from 10 kilobases to megabases.
Length of repeating elements is from 7 bases.

How can i do it ?

Thanx

1 Like
2

This is the tool commonly used to find repeats in sequence data: https://toolshed.g2.bx.psu.edu/view/bgruening/repeat_masker/65ab76d58c41

The tool is not installed at any of the usegalaxy.* public servers. It may be installed at other public Galaxy servers. Or, you may need to set up your own Galaxy server.