Hello all, I am working in the community analysis of the metagenomics data. Kraken2 is complied and merge all its previous separate tools to run in Galaxy. The problem i am facing is that, it will not generate file to view results in the Krona Pie chart. It is most essential step to visualize the …

Good morning, You can convert Kraken data to a format compatible with Krona by using the Convert Kraken data to Galaxy taxonomy representation tool, available at usegalaxy.org and .eu, as well as installable from the toolshed . I haven’t checked whether it’s compatible with kraken2 output, but since…

Galaxy Community Help

How to view Kraken2 Results in Krona?

usegalaxy.org support

troubleshooting

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