I seem to run into Fatal error: Exit code 13 () error_level: 3 while following through with the tutorial for Vina Docking after following every step

1

The workflow for the history is as follows https://usegalaxy.org/u/b-solomon/h/docking![image|690x389](upload://pq5JfQLDXg9ms9DGzOlCJiTIDyn.png)

2

Welcome @Useless_alchemist

We can’t see the shared history, since it seems to be combined with an image link. Did you maybe resolve this already?

If not, I can point you to a prior QA where may of the usual troubleshooting steps were walked through with many details that will likely help others, especially if they are running the tool with their own data! See → Empty Output folder - Vina Docking - #4 by jennaj

Then, if that is not enough, you can try to post the history share link back again. You can also share a few more details.

  1. It looks likes you are working at UseGalaxy.org. If you only post screenshots next, please confirm this and make sure we can see the versions of a tool at the top of the form(s).

  2. Is this using the tutorial data or your own data? The tutorial data should definitely work. Your own data may work but only after being prepared. This is more than using the prepare tool – and could involve correcting input data in other ways, see the topic above for what I mean by this.

  3. Did you try to use the workflow on the tutorial data to create a sort of reference protocol history yet? Did that work?

Great, let’s start there! :slight_smile: