Hi,
I’ve been using the join maf by species tool for a long time, it always works very well. However, it started to report error since today. The massage I got is:“The server could not complete the request. Please contact the Galaxy Team if this error persists. Error executing tool with id ‘MAF_Thread_For_Species1’: getattr(): attribute name must be string”. This error never happened before (I was using the same maf file for joining). Do you have any suggestions?
Sure, I uploaded the hg19_panTro4_example.maf (attached) file to the Galaxy and run “join MAF by species” and selected all species and then click execute (picture attached). The error came immediately after I submitted the job, here is the full error report:
The server could not complete the request. Please contact the Galaxy Team if this error persists. Error executing tool with id ‘MAF_Thread_For_Species1’: getattr(): attribute name must be string
Hi,
Sorry about the missing attachment. Here is the content of that maf file:
##maf version=1 scoring=roast.v3.3
a score=0.000000
s hg19.chr1 793442 9 + 249250621 GAAAACGGA
s panTro4.chr1 758048 9 + 228333871 GAAAACGGA
i panTro4.chr1 C 0 C 0
a score=204951.000000
s hg19.chr1 793451 39 + 249250621 GCTTCTTGGAGGCCACCTGCTGGTGGCAGTGATCTGACC
s panTro4.chr1 758057 39 + 228333871 GCTTCTTGGAGGCCACCTACTGGTGGCAGTGATCTGACC
i panTro4.chr1 C 0 C 0
a score=0.000000
s hg19.chr1 793490 16 + 249250621 GCTGTTTAAGCTTTCT
s panTro4.chr1 758096 16 + 228333871 GCTGTTTAAGCTTTCT
i panTro4.chr1 C 0 C 0
a score=0.000000
s hg19.chr1 817727 50 + 249250621 GATTCAACTCATAGACTCAGGTGGGTGAGGATCTATTGTTCAGCTACATT
s panTro4.chr1 785603 50 + 228333871 GATTCAATTCATAGACTCAGCTGGGTGAGGATCTATTGTTCAGCTACATT
i panTro4.chr1 C 0 C 0