Hello, I am very new to this, so forgive me if I’m missing something but I’ve come across massive discrepancies between processing the same files on the same supposed tools on the EU vs Org sites. The first issue I had was when trying to map paired fastq files on the EU site using “Map with BWA-MEM…

Hi @M.r.t Thanks for sharing the histories! Very helpful. It looks like the reads from the pair didn’t load completely from the SRA at the UseGalaxy.eu server. This then lead to the downstream result discrepancy when mapping. Some mapping tools may have trapped this but I wouldn’t count on that – …

Large discrepancies between processing identical files on Org vs EU site

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Large discrepancies between processing identical files on Org vs EU site

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