Hi friends, Metagenomic single end raw data with cut adapt ‘Maximum error rate 0.3’ Match times: 1 Minimum overlap length:3 minimum lenght: 15 Max N: 0.3 Max expected errors: 30 parameters. Then I aligned the host genome with gallus gallus with BBmap tool. I want to Assembly unmapped read. Ho…

MetaSPAdes genome assembly (shotgun metagenome singleend)

jennaj December 11, 2023, 5:11pm 2

This tool only assembles pairs. Let’s merge with your other question. MetaSPAdes shotgun paired end genome assembly

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