Picard indexer (Fatal error: Exit code 1)

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Hi @asta

This post has the best way to run these: Indexing reference genomes with Data Managers: Resources, tutorials, troubleshooting

Few questions to start with:

  1. You are running Data Managers on a local install of Galaxy? Or is this a docker or cloud Galaxy?
  2. What version of Galaxy? Where was it sourced? The URL would be helpful or explain.
  3. What version of the fasta index DM did you run?
  4. Did you create a new database key or use one that was already available?
  5. Did you provide a fasta file from the history or did you look one up (and from which source)?
  6. Did you allow that to completely finish successfully before running the Picard index DM?
  7. What version of the Picard index DM did you run?

Let’s start there.

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