RNA STAR Reference Genome at UseGalaxy.org -- Resolved

[jennaj]

Hi @KJW

Maybe you discovered this already, but you will need to install reference genomes and their indexes in your local.

This is one prior Q&A that may help – and includes links to others. Or, you can search the forum with the keywords “data manager” for more.

Indexing reference genomes with Data Managers: Resources, tutorials, troubleshooting

Hi, I’m attempting to run HISAT2 on paired RNAseq data. I have run it successfully previously on the main server using the mm10 built-in reference genome, however, I am now using a local server and the built-in reference genomes have apparently not been included in the set-up. I’m hoping to get some assistance on how to obtain the right reference genome file for mm10 installed, or even better how to update the local server so the same built-in reference genome will be available as in the main s…

Thanks!