Running local install of Galaxy server 22.05. I’m having an issue where the manage dependencies are failing to install the rpy2 package. It just runs and then times out. On the server, the process is running but never completes. I killed it and then tried to run via the command as the Galaxy user:
/data/galaxy/galaxy/database/dependencies/_conda/bin/python /data/galaxy/galaxy/database/dependencies/_conda/bin/conda create -y --quiet --override-channels --channel conda-forge --channel bioconda --channel defaults --name firstname.lastname@example.org rpy2=2.9.4
Again, the command gets through Collecting pacakge metadata, but then hangs on Solving environment: … working …
Is there something missing from the installation of Galaxy? I use git clone version 22.05 to install Galaxy. Without rpy2 the statistics packages cannot run.
OS: Centos 7
Python version: 3.7.12