Hi @Lorna
We have a guide here about how tools find the correct dependency versions.
Then we have tutorials here for how to set up a Galaxy server.
This tutorial would be a good place to double check how you were installing tools. In short, use the managed dependencies checkbox to install when doing this individually, or you can do this in batch.
Then, by chance I see that some of the tool versions in your listing do not seem to be the latest version we host on the public Galaxy servers, so consider double checking if that is the version you really want to use. You will find change logs at the developer repositories linked into the Tool Shed that capture all the differences.
Hope this helps and you can ask follow up questions! 