Kindly share if the SplitNCigarReads tool exists. And if so, share its details. If not, is there an alternative tool?
Kindly reply as soon as possible.
Hi abhi_g,
Looking at RNAseq variant calling - #4 by jaredbernard :
“GATK tools are considered deprecated due to reported malfunctioning: GitHub issue. I suggest you to use Freebayes as a replacement. You can find some information about it in the Galaxy Training tutorials”
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