I am unable to run it. As I have uploaded .xtc and .pdb as input files. But this message appears that “No datasets with pdb elements available”. Please help me.
I tried to reproduce this but I was not successful. I guess the problem is that your PDB file is not recognized as a pdb file by Galaxy. I did the following on the usegalaxy.eu but it should be the same on other usegalaxy.* websites.
First, specify the format of your file to help Galaxy identify it when you are uploading it (using the second entry):
You can check the file format by clicking on their entry on the right panel, such as follows:
And it works with my test files as shown below:
Please let me know, if that solves the problem. Otherwise, if you want, you can share your history with me and I can check the matter in more detail. There is a tutorial on sharing history here.
Best regards,
Armin
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