Tool wrapping with Hydra config files -- not CLI arguments -- driving the Python code

Hi @bjoern.gruening thanks for responding!

It’s quite possible that I can fill most of the sensible defaults in the configfile feature. I’ve looked at a few examples on the IUC tools and they don’t seem to inherit other configs like I’d ideally like, but that might be me not finding similar examples.

The good news is I have a colleague from Aus BioCommons willing to showing me the ropes in wrapping and thinks he can get some of the Hydra features mimiced by using JSON with switch cases.

The user-presented conditional for pre-trained Deep Learning models would definitely whittle down the cases, nuc. acids will displace a different set of veritable variables than proteins. That’s a great suggestion.

Thanks. What we’ll do next is try our own attempts over the next few weeks, and then reach out on Matrix if/when we discover what works and what are the pain points.

Best,
Keiran

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