I am trying to use Trinity de novo assembly and get following error. Please see the log file below. Thanks Nagul
Monday, August 12, 2019: 10:44:30 CMD: java -Xmx64m -XX:ParallelGCThreads=6 -jar /opt/packages/trinity/2.2.0/util/support_scripts/ExitTester.jar 0
Picked up _JAVA_OPTIONS: -Dsun.zip.disableMemoryMapping=true
Monday, August 12, 2019: 10:44:31 CMD: java -Xmx64m -XX:ParallelGCThreads=6 -jar /opt/packages/trinity/2.2.0/util/support_scripts/ExitTester.jar 1
Picked up _JAVA_OPTIONS: -Dsun.zip.disableMemoryMapping=true
Monday, August 12, 2019: 10:44:31 CMD: mkdir -p /local/6173355/trinity_out_dir
Monday, August 12, 2019: 10:44:31 CMD: mkdir -p /local/6173355/trinity_out_dir/chrysalis
-------------- Trinity Phase 1: Clustering of RNA-Seq Reads ---------------------
Monday, August 12, 2019: 10:44:31 CMD: cat /pylon5/mc48nsp/xcgalaxy/main/staging//24579588/inputs/dataset_33482018.dat | /opt/packages/trinity/2.2.0/trinity-plugins/fastool/fastool --rev --illumina-trinity --to-fasta >> single.fa 2> /pylon5/mc48nsp/xcgalaxy/main/staging//24579588/inputs/dataset_33482018.dat.readcount
Trinity run failed. Must investigate error above.