Trinity job failed

[jennaj]

Hi @Pedro_Luis_Ramos-Gon

If you are really working at UseGalaxy.org, this might be expected depending on the options used, or even just by chance!

This post has more details (tutorial help, other resource links) but the top summary is here

@jennaj

Everyone could use rnaSPAdes instead!

We are getting ready to deprecate all Trinity tools at UseGalaxy.org due to age and inefficiency in how the tools work. Note that the Trinity tools will still be available, but will not be supported after today.

Also, only one Trinity assembly will run at a time at UseGalaxy.org, so plan for those delays. rnaSPAdes will run as usual with concurrent job processing.. How other public servers run these tools is not part of this particular resource adjustment.

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Current advice

1. Trinity may work at the UseGalaxy.org server but possibly only for small training types of data that do not involve pooled samples.
2. Full analysis jobs should consider rnaSPAdes instead at this server.
3. Other UseGalaxy servers can be alternatives: UseGalaxy.eu and UseGalaxy.org.au are the other two large public options.
4. You don’t need to start over! Just move your history → FAQ: Transfer entire histories from one Galaxy server to another

I hope this helps to clarify what is going on and provides an alternative! Let us know if you have follow up questions.