Hi all, I’m trying to annotate my vcf file with snpeff in the galaxy but there are no available database for Arabidopsis thaliana. Did someone also experience the same issue? I tried to download the database for snpeff from SourceForge but the snpeff tool in the galaxy is not recognizing the file as a database file. It would be really nice if someone could help me with this issue. Thanks.
Cross-posted here: galaxyproject/Lobby - Gitter
Use these two tools to add the database to Galaxy:
SnpEff databases: list available databases
SnpEff download: download a pre-built database
The usage for both are on the tool forms