What ML, NN based variant callers work on Galaxy servers?

Need an AI ML based variant calling tools for Illumina and Oxford data, please. Is there any Galaxy instance I could not find?

Hi,
You can find all available tools and their description in the Gaxy Tool Shed.

Hi @player_777,
I think that there’s not currently any tool with those characteristics. Have you in mind any of them? We can create the tool wrapper if required.

Regards

DeepVariant,

thanks

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DeepSV
DAVI
Clarivoyant
Variant Works
CoVacs are also good tools to see on Galaxy

Thanks! I’ll start working in DeepVariant and will include the rest in the tool request list. I will try to make it available for next week.

Regards

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Where I can access these tools now? Thanks

Hi!
I’m still working on it. I’ll try to make it available for the next week.

Regards

Is there any progress and results available? Thanks.

HI @player_777,
I’ll try to make it available this week.

Regards

Hi @player_777,
I have opened a PR for including the DeepVariant tool DeepVariant PR.

Regards

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Thank you. Please put your tools to the https://usegalaxy.eu/ and https://nanopore.usegalaxy.eu/.

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