Can not find the MimodD tool in Galaxy

usegalaxy.org support
1

Hellow, I see the MimodD read ailgnment tool in Galaxy in this example step 1: https://mimodd.readthedocs.io/en/latest/tutorial_example1.html#ex1-step0 . Now i can not find it in same way.

Thank you,
Yang

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2

Dear Yang,

the linked tutorial assumes a full local install of MiModD. Public severs like usegalaxy.org and usegalaxy.eu often choose not to offer MiModD’s own read alignment tool and a couple of others as they would only be redundant with existing alternatives on these well-equipped servers.

The recommendation is to use bowtie2 for read alignment before using MiModD tools again for variant calling and linkage analysis.

Make sure you read https://sourceforge.net/p/mimodd/wiki/MiModD%20on%20public%20Galaxy%20servers/ for usage hints of bowtie2 and SnpEff (for variant annotation) in conjunction with MiModD.

Good luck with your analyses,
Wolfgang

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Okay, I got it. Very grateful for your help!

4

Hi Yang,

You can run it on the MiModD server, (I think!).
Dave C

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Hi Dave,

Ok, this problem has now been solved, but I still want to thank you for your help!

Warm regard,

Yang

On 4/15/2020 00:01，Dave Clements via Galaxy Community Helpgalaxy@discoursemail.com wrote：

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