I want to know how to use Galaxy to generate a “rearrangement scenario”? Like Figure 1 in the paper “doi:10.1093/bioinformatics/btm468” when CREx was released, or in the instructions in the old version of the CREx interactive webpage “ https://siks.informatik.uni-leipzig.de/software/crex/crex/doc/tu…

Welcome @yaoyuan This is an example input/ouput https://usegalaxy.eu/u/jenj/h/test-crex . The test case didn’t include any TDRL cases, and I can’t get those I made up extra (outside the tool tests) to produce it without an error, using either version of the tool. Let’s ask the author – Hi @bernt-ma…

Dear @yaoyuan , unfortunatellt the command line version in CREx (which is what the Galaxy tool executes) does not have this functionality. The drawing of the figures was a feature that was implemented in the old CREx webpage which unfortunately was shut down. So, currently there is only the (equiva…

Hi @bernt-matthias , I was able to use CREx to generate a rearrangement scenario but am struggling with the interpretation. I found this thread as I was also looking for a way to visualize the output like the old webpage. As the interpretation is relevant to a publication in progress, is there a wa…

Dear @Collin_Bos you can share the history with we (the option to do so is in the history menu). [Screenshot from 2025-09-04 11-17-09] You can create a link and post it here or maybe just share it with me. You can find my email here: Dr. Matthias Bernt - Helmholtz-Centre for Environmen…

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CREx_rearrangement scenario

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tool-help, revoluzer_crex

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