Does refreshing for tool panel changes require a server restart?

Sarah_Sherif_Ali · May 16, 2024, 6:44pm

Hi,

I have installed Galaxy release_22.01 on RHEL 8 and added a couple of custom tools to it. But whenever I change anything in the xml of a tool, I need to restart Galaxy service for the change to take place on Galaxy. Is there a way to make the changes appear directly on Galaxy without the restart

jennaj · May 16, 2024, 10:00pm

Welcome, @Sarah_Sherif_Ali

I think a restart is needed to refresh the tool panel xml files. But let’s double check. I’m cross-posting this to the Admin chat. They may reply here or there. Feel free to join, too. You're invited to talk on Matrix

marten · May 16, 2024, 10:10pm

Newer version have <toolbox monitor="true"> which will reload the toolbox on any xml change of a loaded tool, but at your version I do not think it is available yet.

Sarah_Sherif_Ali · May 19, 2024, 11:35am

can I add this line to my version if yes which script should i add it to

marten · May 19, 2024, 5:15pm

I think it actually might be, add it to your tool_conf.xml (galaxy/lib/galaxy/config/sample/tool_conf.xml.sample at release_22.01 · galaxyproject/galaxy · GitHub)

Sarah_Sherif_Ali · May 20, 2024, 9:38am

my version has this line and yet the issue is not resolved

marten · May 20, 2024, 7:08pm

try installing the watchdog dependency in the Galaxy’s .venv

github.com

galaxyproject/galaxy/blob/release_22.01/lib/galaxy/dependencies/dev-requirements.txt#L233


      
          tuswsgi==0.5.4
          twill==3.0.1
          typed-ast==1.5.2; python_version < "3.8" and implementation_name == "cpython" and python_full_version >= "3.6.2" and python_version >= "3.6"
          typing-extensions==4.0.1; python_version >= "3.6"
          tzlocal==2.1; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4"
          ubiquerg==0.6.2
          urllib3==1.26.8; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.6.0" and python_version < "4" and python_version >= "3.7"
          uvicorn==0.17.6; python_version >= "3.7"
          uvloop==0.16.0; python_version >= "3.7"
          vine==5.0.0; python_version >= "3.7"
          watchdog==2.1.6; python_version >= "3.6"
          wcwidth==0.2.5; python_full_version >= "3.6.2" and python_version >= "3.7"
          webencodings==0.5.1; python_version >= "3.6"
          webob==1.8.7; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.3.0")
          whoosh==2.7.4
          wrapt==1.13.3; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
          wsproto==1.0.0; python_version >= "3.7" and python_version < "4.0" and python_full_version >= "3.6.1"
          yacman==0.8.4
          zipp==3.7.0; python_version == "3.7" and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.6.0" and python_version < "3.8" and python_version >= "3.7")
          zipstream-new==1.1.8

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Does refreshing for tool panel changes require a server restart?

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