Hello guys, I am running EGSEA, and it was working fine until I started to run into errors. I have the file in tabular format. Geneid FFSSCLCR3 FFSSCLCR2 FFSSCLCR1 iPSC1 iPSC2 iPSC3 2018 2867.300115 4384.063805 3697.321171 0 0 0 196047 2139.832269 3254.124667 2938.558938 0 0 3.544768899 …

@Filip_Filipsky @incho The problem is reported in the error message here: [image] incho: Error in plotHeatMapsLogFC(gene.sets = gsets.top, fc = logFC, limma.tops = limma.tops, : All featureIDs in the gs.annot list should map to a valid gene symbol Tool form instructions: Symbols Mapping…

Hello guys, Could it be because I am using hg38? Should I try with hg19 and run EGSEA again? I tried to remove all “NA,” “LOC###,” and ‘XXX-AS’ genes from my list. It still doesn’t run, and I am running out of idea how to make it run. Thank you,

I am experiencing same problem. Did you manage to sort it?

Jennaj, Thank you for the reply. I ended up ditching the dataset. However, I will follow your recommendation and try to reanalyzed the data using the same header as the example. I first thought that I was getting the errors because of NAs and LOC### and so on. Hopefully, it is just the header. I…

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EGSEA help - Error in plotHeatMapsLogFC

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limma_voom, egsea

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