I am running EGSEA, and it was working fine until I started to run into errors.
I have the file in tabular format.
And have a factor as tabular format
and my annotation as tabular as well
But… when I tried to run EGSEA, it says
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
EGSEA analysis has started
Log fold changes are estimated using limma package …
limma DE analysis is carried out …
EGSEA is running on the provided data and h collection
EGSEA is running on the provided data and c5 collection
EGSEA is running on the provided data and gsdbgo collection
EGSEA is running on the provided data and kegg collection
EGSEA analysis took 12.34 seconds.
EGSEA analysis has completed
EGSEA HTML report is being generated …
Report pages and figures are being generated for the h collection …
Heat maps are being generated for top-ranked gene sets
based on logFC …
Error in plotHeatMapsLogFC(gene.sets = gsets.top, fc = logFC, limma.tops = limma.tops, :
All featureIDs in the gs.annot list should map to
a valid gene symbol
Calls: egsea.cnt → egsea
and tried to troubleshoot, but I gave up after three days of trying…
can anyone help me to figure out what I am doing wrong here?
Thank you in advance