Failed to use "Scater: plot library QC"

usegalaxy.org support
1

Hello Galaxy community,

As I use the SingleCellLoomExperiment dataset (the output of “Scater: Calculate QC metrics”) as input for “Scater: plot library QC”, there is error message for this command.
I do not understand why, because the same output can be used for running “Scater: normalize SCE” “Scater: filter SCE”, and “Scater: PCA plot.”

Thanks in advance, if anyone can help.

Susan

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Hi Susan,
can you please share the error message you are seeing?

Thanks,
Nicola

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related Q&A for reference: How to add in a header to a tabular dataset

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Thanks for your quick supports.
I will report the error message via the tool through Galaxy.
I posted the question here, because I was not sure about the situation whether it was just I did not figure things out or it was something wrong with the tool.

Susan