I’m IT support trying to setup Galaxy for a faculty member. I have 20.09 installed on CentOS 7 Virtual server. The site looks to be functioning correctly. I have been able to install toolsets through the Admin Tool Shed. However, for some reason, the fastqc is not able to run. stderr give this: /srv/galaxy/database/jobs_directory/000/6/tool_script.sh: line 9: fastqc: command not found
I ran a find for fastqc and this is the output:
[galaxy@galaxy1 galaxy]$ find . -name fastqc -print
Did fastqc get installed correctly? What steps can I do to troubleshoot this?