Hi @dairon
Yes, the 2023 database is known to be a problem. Ref: problem with funannotate - #3 by jennaj
The 2022 database had been working for others … but maybe there is still some problem!
We’ll need to wait for the indexes to be fixed for your use case. All indexes are undergoing a reorganization this summer, so in a few months this will be sorted out 
Thanks for letting us know about the problems!