Hi all, I am working on galaxy and have a genome file in genbank format. To use featurecounts for my RNAseq, I need to convert the genbank format to a GTF format because that’s the format the featurecounts tool in galaxy expects. Now, I tried to convert thse genbank to GFF3 using GenbaktoGFF3 tool i…

Hi @anubhavbasu , it seems that this problem has been fixed recently, but the new tool version isn’t available in usegalaxy.org yet; I have requested to update it; meanwhile, I suggest yo use usegalaxy.eu , since gffread works fine in that instance. Regards

GFF3 to GTF conversion

usegalaxy.org support

jennaj Split this topic October 25, 2022, 8:50pm 6

A post was split to a new topic: Converting GFF3 to GTF

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GFF3 to GTF conversion

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