Can someone in Galaxy add the genome for Rickettsia rickettsii to the dropdown list for HISAT2for the reads to

Hi @Sonenshine Thanks for explaining! You need to generate counts for both DESeq2 and Limma, and the same counts files can be used with both, so you only need to do that once. The counts should be against the same reference genome and use the same reference annotation for all of your samples. Wh…

I am using HISAT2, but my reference genome Rickettsia rickettsii is missing in the dropdown list.

jennaj Split this topic August 23, 2024, 11:38pm 15

2 posts were split to a new topic: FastQC Troubleshooting

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I am using HISAT2, but my reference genome Rickettsia rickettsii is missing in the dropdown list.

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