Installing local galaxy failed at step: run miniconda installer

Markus_Konkol · August 8, 2023, 6:22am

Hi,
I am following the galaxy with ansible installation tutorial (Galaxy Installation with Ansible) but fail when running the playbook (Ubunutu 22.04.2). It stops at the step “run miniconda installer” and prints the following error that I don’t understand. What can I do?

fatal: [localhost]: FAILED! => changed=true 
  cmd:
  - /bin/sh
  - /tmp/ansible-miniconda-installer.rnn9nixs.sh
  - -b
  - -p
  - /srv/galaxy/var/dependencies/_conda
  delta: '0:00:01.715882'
  end: '2023-08-08 08:05:18.684320'
  msg: non-zero return code
  rc: 1
  start: '2023-08-08 08:05:16.968438'
  stderr: |2-
...
stderr_lines: <omitted>
  stdout: |-
    PREFIX=/srv/galaxy/var/dependencies/_conda
    Unpacking payload ...
  stdout_lines: <omitted>

jennaj · August 8, 2023, 6:08pm

Hi @Markus_Konkol

I don’t recognize what this is except for some potential permissions problem.

Scroll down in this section of the tutorial to the last step (step 10). What content was created so far? In particular, does the content of this file appear to match what you expect? You could post that back here for more context.

/srv/galaxy/config/galaxy.yml

And, let’s cross post over to the Admin chat. They may reply here or there, and feel free to join the chat. You're invited to talk on Matrix

Markus_Konkol · August 9, 2023, 6:07am

Hi @jennaj
I checked step 10:
Yes, Galaxy has been deployed under /srv/galaxy/server and the configuration file is in /srv/galaxy/config/galaxy.yml. I took some screenshots to show the setup and will also refer to this thread in the admin chat.