Issue in failure resuming paused jobs, in Computematrix.

usegalaxy.org support
1

I have been experienced many times unexpected paues when I ran computematrix in the last 12hrs. And as the previous topic indicated this situation is accompanied with disrupted input files after paused. I am pretty sure about my input file format, and also I was suspected of running too heavy job so I applied default value to run in the rest of the tries.But it is still not works and falls into the permanent and unresumable situation.

I have read all this issue-related topics, is it possible that the server is not in good shape?
I have checked the Galaxy-server status on the website, but it showed green status.
It really makes me confused … Is there anything I do wrong?

Job API ID: bbd44e69cb8906b50d1bcca388ad522a
Job API ID: bbd44e69cb8906b58bc50ff74f39122a
Job API ID: bbd44e69cb8906b5c2953ccc22456ba4

Thanks for your reading.

2

Hi,
Have you tried other Galaxy instances?

3

I had tried to upload my data, also get an unexpected error.

4

Can you show us the actual error message, please?

5

In the massage: input “file” is in an error state.
But the job did not change to the red states, but just the paused status.

6

Hi,
You can paste the entire error message text here, it’s easier to check it.

7

Hi,
I am sorry for the delayed response.
For the Compute matrix part, I think it could be due to the inappropriate format.
I used the output of bdgpeakcall to load on computematrix.
The error message showed:
“Unrecognized line 1 of stdin:
1 3001858 3002088 /galaxy-repl/main/files/054/732/dataset_54732119.dat_narrowPeak1 20 . 0.00000 0.00000 0.00000 115”
I thought maybe bedgraph is an inappropriate format for Computematrix when it read it as bigwig.
Or any suggestion? I am not sure what I think is right or wrong.

And about responding to uploading failure, I would switch to the newest issue raise from Macmade.
Thank you so much for your helping!