MACS2 cutoff analysis

[skabra3]

I am trying to use the MACS2 CallPeak for CUT&RUN data

Specifically, I want to use the macs2 callpeak --cutoff-analysis to check how the cutoff affects the number of peaks, the average length of peaks, and the total length of peaks.

How can I find this option to check on the Galaxy tool?

Thanks!

[jennaj]

@skabra3

macs2 callpeak --cutoff-analysis

Hi @skabra3

Please find this option implemented in Galaxy on the MACS2 bdgpeakcall tool form.

Hope this helps!