I have been struggling with running MACS2 for the past two weeks. The software is not producing narrowpeaks results and bed results when adding an input. I am not sure what is the issue and I have tried running it many times with different parameters. I have checked EBI/SRA and the data is loaded co…

MACS2 narrowpeaks results are empty when adding an input

jennaj June 16, 2022, 1:49am 2

Topic		Replies	Views
MACS2 scientific result troubleshooting troubleshooting , macs2 , chip-seq , mapping , blast , filter-bam , igv , fastqsanger , epigenetics , picard_markduplicates	6	842	June 16, 2022
ATAC-Seq Analysis Using MACS2 Callpeak usegalaxy.org support gtn-tutorial , atac-seq , picard_markduplicates	1	133	November 12, 2024
ChIPseeker missing first peak in the interval file? macs2 , chip-seq , epigenetics	2	239	January 10, 2024
Macs is not working on Bowtie2 data. Its A chip seq analysis on coursera usegalaxy.org support	1	378	April 11, 2020
MACS2 bdgcmp troubleshooting macs2 , chip-seq , exceeds-memory-error , macs2_bdgcmp	4	50	August 28, 2024