I have an issue with MAKER.
When a launch maker, the jobs never end and use < 1 cpu.
After looking on the node, i see that qrsh failed : [qrsh]
Any help would be appreciated.
[galaxy@node11 ~]$ ps aux | grep galaxy
galaxy 32367 0.0 0.0 107088 1548 ? Ss 17:51 0:00 /bin/bash /media/vol2/home/galaxy/galaxy/database/jobs_directory/000/56/galaxy_56.sh
galaxy 32386 0.1 0.0 106192 1608 ? S 17:51 0:00 /bin/bash /media/vol2/home/galaxy/galaxy/database/jobs_directory/000/56/tool_script.sh
galaxy 32866 0.0 0.0 12888 1208 ? S 17:51 0:00 mpiexec -n 10 maker --ignore_nfs_tmp maker_opts.ctl maker_bopts.ctl maker_exe.ctl
galaxy 32867 0.0 0.0 0 0 ? Zs 17:51 0:00 [qrsh] <defunct>
root 32981 6.3 0.0 97908 3908 ? Ss 17:52 0:00 sshd: galaxy [priv]
galaxy 32984 0.0 0.0 97908 1780 ? S 17:52 0:00 sshd: galaxy@pts/0
galaxy 32985 0.6 0.0 108432 2088 pts/0 Ss 17:52 0:00 -bash
galaxy 33115 0.0 0.0 110232 1196 pts/0 R+ 17:52 0:00 ps aux
galaxy 33116 0.0 0.0 103304 916 pts/0 S+ 17:52 0:00 grep galaxy
log
Possible unintended interpolation of @2 in string at /media/vol2/home/galaxy/galaxy/database/dependencies/_conda/envs/__maker@2.31.10/bin/../lib/5.26.2/x86_64-linux-thread-multi/Config_heavy.pl line 260.
Possible precedence issue with control flow operator at /media/vol2/home/galaxy/galaxy/database/dependencies/_conda/envs/__maker@2.31.10/lib/site_perl/5.26.2/Bio/DB/IndexedBase.pm line 805.
error: executing task of job 1007802 failed: execution daemon on host "node11" didn't accept task