MAKER on galaxy runs out of local space

usegalaxy.org support
,
1 
setting up GFF3 output and fasta chunks
doing tblastx of alt-ESTs
couldn't close /tmp/maker_OjPCEj/0/CM044431%2E1.0
No space left on device at /usr/local/bin/../lib/FastaFile.pm line 60.
--> rank=NA, hostname=galaxy-main-set03-14.novalocal
ERROR: Failed while doing tblastx of alt-ESTs
ERROR: Chunk failed at level:4, tier_type:3
FAILED CONTIG:CM044431.1

ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG:CM044431.1

examining contents of the fasta file and run log

Does anyone know if there is a fix for this?

2

Hi @Sean

Your issue is similar to a recent discussion here → incomplete annotation with maker - #6 by jennaj

In short, the cluster node was not able to handle the data. That topic above has links to some resources and discussion about strategies. Maybe compare to the example workflow and explain what you are doing different? You can also share the job and I’ll double check that these are the same.

Let’s start there, thanks! :slight_smile: