Hi, I have an existing dataset from nanopore run in fast5 format. I’m using GALAXY to convert it into fastq format. The tools which I’ve trialled from the tools list are : 1) extract fastq in tabular format from a set of fast5 files and 2) extract read in fasta or fastq format from nanopore files. …

Hi @jas This error indicates that a tar archive was loaded and used for the input. For many cases when a tar archive is uploaded, only the first file in the archive is loaded. That first file can be an index, which won’t contain any reads. These tools are working at UseGalaxy.org using the tool’s …

Nanopore data upload, format/datatype, and unexpected results from tools

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jennaj Split this topic December 21, 2022, 12:24am 6

2 posts were split to a new topic: Extracting reads from fast5 format

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Nanopore data upload, format/datatype, and unexpected results from tools

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