Hello, I am relatively new to Galaxy and computational genomics in general but I am trying to complete an undergraduate research project and any help would be greatly appreciated!!
I have a whole bunch (~15) fungus genomes belonging to either group A or group B. I want to see if the group A fungi have any genes that have significantly more copies compared to group B. (basically seeing if group A have higher expression of any genes which could influence their phenotype)
Let me know if there are any tools in Galaxy to do this type of comparison, I have tried using “Gecko” but I did not get any clear output.
Thank you!, Any feedback is greatly appreciated