Output file from Align.seqs have NBases too short

[Pablo_Andres]

Hello, I am running Align.seqs tool (mothur) using a silva.v4.fasta reference file, but when perform Summary.seqs I get the photo result.

NBases 2 - 3 bp instead compelete sequences =/

Does anyone know what is going on?

I used Miseq Ilumina platform