I have prokka-annotated files of different Metagenome Assembled Genomes. Can I use panaroo for pangenome analysis.
One more question is that What kind of output plot does panaroo generates.
Hi @kavya23247,
Yes, you can use Panaroo with (a collection of) annotation files generated by Prokka.
The list of output files is available in the Help section, at the bottom of the job setup page.
Kind regards,
Igor
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