Hi @Dongqi_Xie
Let’s start over in a new topic and reference the other one.
I haven’t seen the tool form as hosted in the Docker Galaxy (or, maybe forgot by now!) – but we might be able to figure this out anyway! Screenshots are probably where to start.
Try to capture these views.
- The tool form. Expand the “accepted formats” toggle to reveal the datatypes each section is expecting. This can be just the “mixed up inputs” sections or more. In particular, if there are different modes that change the form, maybe capture those to reveal the different ways the tool can be used.
- Datasets in the history panel. If some of the data are in collection folders, click into those and grab another screenshot, with at least one of the datasets expanded to show the metadata.
- Both together. The tool form where the “potential” dataset inputs are being selected. Please make sure that the history panel is included and those same datasets are in the view (expanded, to reveal the datatype and other metadata).
It is Ok to capture a few screenshots of each with the different menus/views expanded and not, and the datasets expanded and not. You can post everything back here.
Finally, if you could confirm the tool repository and the Galaxy Docker that would help (but as I already stated, I think we’ll be able to figure it out anyway!). This one?
rMATS tool wrapper
Docker Galaxy source
I’ll watch for your reply and if you already solved this, please let us know! 