Run from command line

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Hi

We are trying to run workflow from command line, and I looked into this script: https://www.biostars.org/p/94305/ , however, I can not find the WORKFLOW_ID and TOOL_ID_IN_GALAXY, does anyone know how to get these 2 variables? Also can I use the name of .ga file as WORKFLOW_ID? ( I have downloaded a .ga file from the Galaxy interface)

Does anyone know how to run .ga file from command line?
And is there any script that can better run workflow from command line?

Thanks

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2

A good intro into how to run a workflow through API is in the bioblend documentation (https://bioblend.readthedocs.io/en/latest/api_docs/galaxy/docs.html#run-a-workflow)

This project for generating a standalone script for workflow execution might be of interest too: https://github.com/mvdbeek/workflow2executable

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