SnpEff eff (version 5.2)

usegalaxy.org support
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Hi @xuanz01,

I never tested the combination of MiModD with Snpeff 5, but there’s a good chance it will work if you select the Annotation Option: `Use 'EFF' field compatible with older versions (instead of 'ANN')`

This option is crucial because MiModD looks for and parses only EFF field information and will simply ignore the ANN field as you found.