thank you very much @jennaj ,I did not make my question clear enough, i want something similar to the workflow GeneSeqToFamily, I have gene clusters I am interested to compare and visualize between different species, but when i follow the workflow GeneSeqToFamily, T coffee fails every time, therefore i am wondering if there is another way to do a blast,align the best hit, visualize the surrounding genes close to it and also do family tree from those alignments.
I am still a beginner and I am sorry if i don’t make sense.
thank you very much for your reply.
regards
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