This is the legacy workflow run form. One or more tools in this workflow have required inputs that are not connected to other steps. The simplified form cannot handle disconnected runtime inputs

usegalaxy.org support
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1

I am new to Galaxy and trying to run genome annotation pipelines on the platform, as many of these pipelines are quite cumbersome to install and configure locally or on a server account.

In particular, I am attempting to run the Funannotate pipeline, which is highly recommended for genome annotation. However, as soon as I try to execute it, I receive a warning (screenshot attached). Could anyone please guide me on how to update or troubleshoot this workflow? Any advice on resolving this issue would be greatly appreciated.

Galaxy_error
Galaxy_error1586×494 85.9 KB

Thank you in advance for your help!

2

Hi @Ramawatar_Nagar ,

Click at Workflow icon in the left side menu. Select the workflow in question for Edit (click at Edit Workflow button). Do you see missing connections? Do you see any messages about tool updates?

Unfortunately, fixing a complicated workflow can be very difficult. Maybe try and follow any relevant GTN tutorial in Genome Annotation / Tutorial List

Also, search the GTN for Galaxy workflow tutorials.

Kind regards,

Igor