Abundance bar plots

1

Hi Everyone, I have used PhyloseqR and able to use the interactive tool ShinyPhyloseq, but I am encountering the problem in getting the abundance bar plots as I am getting only bacteria and Eukaryote in my bar plots, however, I cannot see other species and classes in bar plots.

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But in Krona chart, I can see complete taxonomic classification.
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Cn anyone suggest where I am getting wrong.
Thanks, Shweta

2

Hi @Shweta.203

I’m not sure I understand, could you explain more? The missing bar chart plots appear to be unclassified, but maybe I am missing something!

Thanks! :slight_smile: