I am trying to run phyloseq to charactize microbial community of plant sample. I used QIIME2 to generate barplots. I downloaded barplot as a csv file. I am trying to use phyloseq in Galaxy Europe to generate microbial profiling. What are the files that are required to run phyloseq workflow in Galaxy?
Welcome, @Winnifred
There are links to help on the tool form, and you can find an example in the tutorial linked from there. Please start with → Galaxy Training Network (GTN) tutorials for Phyloseq
In short, you need to create the RDS object first. Search the tool panel with “phyloseq” to see the pre-configured tools available. You can also use R directly in Galaxy to do this, while using the original documentation here Importing phyloseq Data.
And, let’s ask one of the AU support scientists to see if more is available. Hi @igor – would you like to add in anything?
Hopefully this helps! 
Hi @jennaj,
Unfortunately, Galaxy Australia does not have Phyloseq Interactive Tool. It looks like the European server is the only option for the tutorial at this point.
Kind regards,
Igor
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