Hi would it be possible to have the Arabidopsis thaliana TAIR10 genome installed for HISAT2? thanks a lot best

Hello @pej That genome has not been indexed for HISAT2 at https://usegalaxy.org . We do plan to do that as part of a larger project but it won’t be completed for a bit more time. You don’t need to wait. There are two choices: Upload the genome in fasta format and use it as a Custom Reference geno…

Arabidopsis thaliana TAIR10 genome for HISAT2

usegalaxy.org support

jennaj August 22, 2019, 6:05pm 3

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Arabidopsis thaliana TAIR10 genome for HISAT2

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