built-in genome index update for felis catus

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Hi,
I am working on felis catus genome.
There is a 9th version of the felis catus genome. however in galaxy I can only see the 8th version.
When is the update coming for felis catus?
Would it cause any issue if I were to upload felcat9th files and make the bwa mapping?

kind regards.

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Hi @nuket_bilgen

This genome is already on the list to be updated at usegalaxy.* servers, but that is part of a larger project and it won’t be completed for some time.

Meanwhile, you could source the genome fasta (soft-masked version) from UCSC https://genome.ucsc.edu, upload to Galaxy, and use it as a custom genome directly with tools.

FAQs:

Thanks!

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