I have used the dist.shared mothur command to measure the beta diversity using the bray curtis metric. I want to visualise this using a PCA plot. What mothur tool is compatible with phylip files to create PCA plots?
Hi @daisy20166
Please see here – the link is to the exact section of the tutorial with the help. That tutorial also has a workflow that can be imported and customized. 16S Microbial Analysis with mothur (extended)