Hi,
I came across this topic in 2021: Bismark meth. extractor not generating coverage files. Despite the suggestion to update the tool, I am still experiencing the same issue.
I am aware that there is an updated version of the tool available on Galaxy, as I was using it on a local Galaxy previously. Would it be possible for someone from the Galaxy EU team to make this version of Bismark available? I really need the .cov files.
Thank you very much!