Hi
I used : [https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/devteam/fasta_compute_length/fasta_compute_length] to compute length of sequences in fasta file. The file was generated like this
| c3386_g1_i2 len=1028 path=[159:0-115 79:116-1027] | 984 |
|---|---|
| c3389_g1_i1 len=1737 path=[1:0-1736] | 1650 |
| c3389_g2_i1 len=280 path=[3686:0-279] | 268 |
| c3391_g1_i1 len=473 path=[1:0-160 162:161-234 518:235-398 162:399-472] | 455 |
| c3391_g1_i2 len=270 path=[1:0-160 162:161-234 236:235-269] | 258 |
| c3392_g1_i1 len=397 path=[349:0-248 224:249-396] | 385 |
| c3393_g1_i1 len=223 path=[201:0-159 361:160-179 381:180-222] | 209 |
| c3397_g1_i1 len=617 path=[595:0-616] | 581 |
Now i need to correct the count number in fasta file.Is there any tool for this purpose.