Cuffdiff--SQLite option is buggy for all versions or just for the latest one?!

[jennaj]

Hello @Hart95

The tool has been deprecated for a couple of years. The creation of an SQLite database was one of the known issues that was never resolved (and won’t be).

Ticket with more details: Cuffdiff SQLite output problem · Issue #50 · galaxyproject/usegalaxy-playbook · GitHub

We strongly recommend moving to use current (and supported) differential expression tools and methods. Find tutorials that explain usage under the “Transcriptomics” topic from the GTN.

@jennaj

Galaxy Training Network Tutorials : Some GTN tutorials are appropriate for Galaxy Main and some are not. Where you can run each is noted per tutorial – click on the Galaxy instances gear icon to review the Public Galaxy server choices. If a tutorial is supported by a pre-configured Galaxy Docker training image, instructions for how to get it will be listed below the tutorial listings, per category.

Thanks!